-Genomic Data for ARX Links
Protein
ARX
UniPROBE Accession Number
UP00584
Species
Homo sapiens
Domain
Homeobox
Swiss-Prot
Q96QS3
Name and Synonyms
Name: homeobox protein ARX.
Synonyms:Aristaless-related homeobox, CT121, EIEE1, Homeobox protein ARX, ISSX, MRX29, MRX32, MRX33, MRX36, MRX38, MRX43, MRX54, MRX76, MRX87, MRXS1, PRTS
IHOP
108163
Description
Transcription factor required for normal brain development. May be important for maintenance of specific neuronal subtypes in the cerebral cortex and axonal guidance in the floor plate.
NCBI RefSeq
NP_620689
ARX DNA binding domain
1   RRYRTTFTSY QLEELERAFQ KTHYPDVFTR EELAMRLDLT EARVQVWFQN
51  RRAKWRK
JASPAR
None Available
-PBM Motif Data for ARX_REF_R2
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)
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PWM
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Top Kmer
CTAATTAG E.S. 0.498
CTAATTAG E.S. 0.498
Downloads
Download the zip of all ARX_REF PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
-PBM Motif Data for ARX_REF_R1
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)
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PWM
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Top Kmer
TTAATTAA E.S. 0.498
TTAATTAA E.S. 0.498
Downloads
Download the zip of all ARX_REF PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
-PBM Motif Data for ARX_L343Q_R1
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)
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PWM
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Top Kmer
A..ATATGTA E.S. 0.447
TACATAT..T E.S. 0.447
Downloads
Download the zip of all ARX_L343Q PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
-PBM Motif Data for ARX_L343Q_R2
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)
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PWM
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Top Kmer
G.TAATTA.C E.S. 0.471
G.TAATTA.C E.S. 0.471
Downloads
Download the zip of all ARX_L343Q PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
-PBM Motif Data for ARX_P353L_R2
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)
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PWM
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Top Kmer
CTAATTAG E.S. 0.498
CTAATTAG E.S. 0.498
Downloads
Download the zip of all ARX_P353L PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
-PBM Motif Data for ARX_P353L_R1
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)
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PWM
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Top Kmer
CTAATTAG E.S. 0.499
CTAATTAG E.S. 0.499
Downloads
Download the zip of all ARX_P353L PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
-PBM Motif Data for ARX_P353R_R2
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)
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PWM
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Top Kmer
ATAATTAT E.S. 0.464
ATAATTAT E.S. 0.464
Downloads
Download the zip of all ARX_P353R PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
-PBM Motif Data for ARX_P353R_R1
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)
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PWM
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Top Kmer
AT.TATA.AT E.S. 0.449
AT.TATA.AT E.S. 0.449
Downloads
Download the zip of all ARX_P353R PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
-PBM Motif Data for ARX_R332H_R2
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)
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PWM
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Top Kmer
G.TAATTA.C E.S. 0.483
G.TAATTA.C E.S. 0.483
Downloads
Download the zip of all ARX_R332H PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
-PBM Motif Data for ARX_R332H_R1
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)
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PWM
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Top Kmer
TTAATTAA E.S. 0.477
TTAATTAA E.S. 0.477
Downloads
Download the zip of all ARX_R332H PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
-PBM Motif Data for ARX_T333N_R2
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)
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PWM
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Top Kmer
CTAATTAG E.S. 0.497
CTAATTAG E.S. 0.497
Downloads
Download the zip of all ARX_T333N PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
-PBM Motif Data for ARX_T333N_R1
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)
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PWM
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Top Kmer
TTAATTAA E.S. 0.499
TTAATTAA E.S. 0.499
Downloads
Download the zip of all ARX_T333N PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Download Data for ARX (all alleles)
Downloads
Download the zip of all ARX PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
-ARX Datasets
Clone Clone Type Last Modified Save View
ARX_REF DNA binding domain only search save
ARX_REF Insert Sequence
1   AGSDSEEGLL KRKQRRYRTT FTSYQLEELE RAFQKTHYPD VFTREELAMR
51  LDLTEARVQV WFQNRRAKWR KREKAGAQTH PPGLPF


ARX_L343Q DNA binding domain only search save
ARX_L343Q Insert Sequence
1   AGSDSEEGLL KRKQRRYRTT FTSYQLEEQE RAFQKTHYPD VFTREELAMR
51  LDLTEARVQV WFQNRRAKWR KREKAGAQTH PPGLPF


ARX_P353L DNA binding domain only search save
ARX_P353L Insert Sequence
1   AGSDSEEGLL KRKQRRYRTT FTSYQLEELE RAFQKTHYLD VFTREELAMR
51  LDLTEARVQV WFQNRRAKWR KREKAGAQTH PPGLPF


ARX_P353R DNA binding domain only search save
ARX_P353R Insert Sequence
1   AGSDSEEGLL KRKQRRYRTT FTSYQLEELE RAFQKTHYRD VFTREELAMR
51  LDLTEARVQV WFQNRRAKWR KREKAGAQTH PPGLPF


ARX_R332H DNA binding domain only search save
ARX_R332H Insert Sequence
1   AGSDSEEGLL KRKQRRYHTT FTSYQLEELE RAFQKTHYPD VFTREELAMR
51  LDLTEARVQV WFQNRRAKWR KREKAGAQTH PPGLPF


ARX_T333N DNA binding domain only search save
ARX_T333N Insert Sequence
1   AGSDSEEGLL KRKQRRYRNT FTSYQLEELE RAFQKTHYPD VFTREELAMR
51  LDLTEARVQV WFQNRRAKWR KREKAGAQTH PPGLPF


References
Data are analyzed by array designs with AMADID #s 030236, 015681 in Barrera et al., Science 2016


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